If this were my bike, based on all I've read I would decide that clutch misalignment is the problem. I think that when the engine is mounted, the clutch push rod is hitting the edge of the diaphragm spring hole rather than entering its center. It's difficult to detect that misalignment when inserting the rod with your method. An alignment tool is needed for the best result. I've come to this conclusion because I found no specific data supporting a change in rod length for the K75—only that ambiguous reference in the parts fiche. Maybe one of the experience pro BMW mechanics that are members here will sound off about this symptom.
You can always take a few more stabs at realignment then remounting the transmission to check. It's a good upper body workout. You seem to be persistent so I think this will get sorted sooner than later.