I'd like the motobrick community to know that I don't trust vehicle repairs or maintenance to ANYONE, except when it comes to things that are not practical (such as aligning all 4 wheels on my Subaru)...
At any rate, I had the clutch out again today to replace the disc due to its splines that were nearly used up. From an idea mentioned somewhere, I tried re-orienting the components and setting them on a tennis ball on a table then spinning the assembly (minus the disc and diaphragm spring) to figure out what position everything was balanced in. I found I could make it better but didn't get a conclusive result.
I picked up a "portable wheel balancer from Harbor Freight to see how it would work with the assembly (one of these):

Without getting into its effectiveness as a wheel balancer, which seems to be of debate if you search for reviews of it, I couldn't get the assembly situated on the balancer right due to the hole in the clutch cover being smaller than the cone-type thing on the balancer which wheels would be centered on. Also, it wasn't heavy enough to press down the spring loaded thang. I'll take the thing back tomorrow.
Except for the orange-ish paint on the clutch cover I truly can't find any decent paint marks on the components to set them 120 degrees from each other (which I believe is the correct way to do it, regardless of the advice of my dealer's service manager). It doesn't help that someone added paint marks on the pressure plate-type thing. Using the tennis ball method (hey it was the best idea I've come across) I got the assembly oriented with what seems to be the best balance and threw everything back together. I'll test ride it tomorrow after adjusting the clutch.
BTW, could this have been causing my vibration issue? I believe it went away since replacing the disc (will know for sure tomorrow):
If the vibration seems to still be present I'll arrange to have a machine shop balance the damn thing