Partial success:
I backed off the steering head bearing preload to 'just under too tight'. I wish that I had only done that - but I also took off the front wheel and check for run out, out of round and fork alignment using the 'axle test'. Everything looks great: nothing is out of round, if there is any lateral run out it is probably from my measuring setup (maybe 0.5mm max?). No dings. No runout on the brake disks, etc. The axle slides into the left fork tube easier than it ever has since I've owned the bike! Just very light finger pressure. I didn't change anything, though. Just retorqued the bolts on reassembly.
The good news: I no longer feel the 45-50mph wobble. I believe it was the steering adjustment that 'cured' it: Frankenduck called it! The odd thing is that the wobble developed while the bike was sitting. Then I replaced the steering bearings and still had the issue. It wasn't until I went too tight and then backed off that anything changed.
Bad news: the 'hop' remains. It is at its worst at about 35mph. It doesn't matter what gear the bike is in, I had the same symptom in 2nd, 3rd, and 4th at the same speed. I'm calling it a hop but it feels kind of like going over highway expansion joints that are really close together so it feels rhythmic. It isn't a sharp jolt, just and up and down. Applying brake pressure doesn't change it. Worst when off the throttle or trying to maintain speed. It is most noticeable in the handlebar and front fairing - but I am not ruling out the rear end. I don't feel the rhythm at higher or lower speeds. Also, it happens on perfectly flat new asphalt! Bumps aren't needed.
At 50mph+ the bike is now feeling like it used to.
Since it is speed related, that narrows it down to drive shaft, final drive, wheels and tires, front wheel bearings, brakes. Did I miss anything?
It appears that I can only deal with one problem at a time. Compound issues are too much!