Martin, the photos are of an 1100 which I think has a different arrangement for attaching the battery covers. The pin on the tail cowl in the pictures is correct.
As far as the seat hinge, it should be welded to the frame. I'm guessing that the fix is to get a chunk of 5 or 6mm rod and weld it to the frame. No need for the clip on it, the seat portion of the hinge isn't going to slip off as long as the rear hinge is in place.