The brown/blue wire is the 'ground' circuit for the motronic relay. It goes thru the side stand switch for ground, to energize the motronic relay.
If you say the bike won't start with this jumper removed, check the wiring to the side stand switch. BR/BL to the switch and then BR from the switch to a ground point.
BTW the bike isn't intended to start with the side stand down.
If you say the bike dies when the fan relay energizes, that makes sense to me. As the fan relay closes it puts equal +12 on the BR/BL wire, 'over powering' the 'weak ground' thru the fan motor wiring to the motronic relay.