Were the new spark plugs NGK's? Did you put terminal nuts on them if they were? NGK specs a plug for the K bikes that is correct in every way except that the terminal for the plug wire doesn't have the terminal nut that is necessary for a good connection. You can get the nuts from NGK tech service in Michigan.
You say you balanced the throttle bodies. Did you start with all the mixture air screws about 1 1/2 turns out? When you are done, all the air screws should be open about the same amount. If you start from the same point, you shouldn't need more than a half turn either way to balance the vacuum on a cylinder.
Proper spray pattern from the injectors should be a fairly narrow stream. A fine mist indicates a plugged nozzle. There are inexpensive injector cleaning kits that have a plastic fitting that allows you to connect he injector to a can of carb cleaner and a wire to connect it to a 9v battery to open it. They can be had online for under 10 bucks. There are also rebuild kits that have new o-rings, filters and pintle caps that will rebuild all your injectors for 5-6 bucks.
A quick test to see if the problem is in one cylinder would be to start up the engine and let it run for a couple seconds. Shut it down and feel the header pipes close to the head. They should all feel equally hot. If one is colder or hotter than the others, that is where the problem is and where you should concentrate your attention. If all are the same, the problem is more likely to be in the engine control system or one of the sensors for ignition, temperature or air flow.
Last, as mentioned earlier, double check the hose connections to the fuel filter. You will not be the first to have had a connection slip off the filter and leak fuel back into the tank. This can be best seen by running the engine with only a gallon of fuel in the tank.