Reading this thread I'm a bit puzzled. Are the pins 3/16" above the center of the grommets, or are they 3/16" to the rear of the grommets?
On occasion I have had trouble with getting the pins in the grommets on my RT, the usual cause is a connector(one of those big ones for the combination switches) not settling down into that huge mass of wire around the frame backbone.
I've also had to reposition that big rubber wishbone shaped pad that runs from the headstock down the two side rails of the frame. That thing can prevent the tank moving forward as well as down. Truth be told, I have no idea what it's for other than to prevent airflow under the tank. As long as you're selling the bike, maybe you can remove it and just include it with the bike.
No matter what, when the tank is finally in place, there isn't any spare clearance under it.