OK When the I checked the 4 pin connector for the fuel pump and fuel gauge I get voltage of approx 10v between white and brown and the fuel gauge works but when I opened up the tank and disconnected the electrical connection on the pump itself I get 0 volts. That would seem to indicate a break somewhere from the tank connection to the pump itself. Seems weird that I did hear the pump when the fuel lines where incorrectly connected and don't now.
Can't think of any irrelevant witticisms to add to the thread so I will just offer some suggestions to help get you running.
First of all, the pump only runs when the starter is pushed, if the engine doesn't start it shuts off when the button is released.
Second, the four pin tank connector is notorious for lousy connections, especially for the pump. It need to be squeaky clean, and in some cases(my K100RS) the female sockets need to be gently tweaked to get a better grip on the male pins.
As far as the reversed fuel lines, I doubt that reverse flow on the fuel pressure regulator will damage it. I know this because I have connected them ass backwards with no bad result. Since there probably was no fuel pressure getting to the rail, there will be no damage to the injectors, they would be just about the last thing I would look at.
Test the fuel pump by disconnecting the return line from the rail and connecting a hose from the rail to a container to catch the fuel when the pump runs. That will confirm that the pump is working and the filter and lines are clear.
Since you had the transmission off, I would also suspect the side stand switch it will allow the engine to crank but not start, and there is no override for it. But check the pump before going into that.