I'm going to assume this is a non-ABS bike - and that the master and all lines were totally dry.
Close your speed bleeders. Take off the master cylinder cover. Squeeze the brake lever, while watching the fluid in the reservoir. If you see some small air bubbles come up, then keep doing this until bubbles stop rising to the surface. Maybe tap the new lines a few times too - to get the fluid to flow down past any trapped air.
Once the bubbles stop coming up, you will have pressure again and can bleed out the remaining air from the lines.