My rear brake pulses too...
If I remove the wheel and the disc, then clean all the mating surfaces and also the friction portion of the disc (with a mild abrasive) the pulsing is much reduced. Then it comes back after a couple of hundred miles. Also, making sure the wheel bolts are at an even torque makes a difference too - just 'doing them up' by hand is fine, but if you're a little off with torque balance it can put a wobble on the disc.
A new disc may or may not solve the issue.
Oh, and I can't see a difference in the important dimensions between ABS and nonABS discs (I have both here) but that's by eye... The only real difference I can see is the sensor ring.